goatpy documentation
====================

**goatpy** is a Python toolkit for spatial glycomics analysis, combining MALDI
mass spectrometry imaging with H&E histology registration and analysis.

.. toctree::
   :maxdepth: 2
   :caption: Getting started

   installation
   guides/getting_started

.. toctree::
   :maxdepth: 2
   :caption: Tutorials

   guides/Tutorials/multi_sample_analysis
   guides/Tutorials/interactive_analysis_gui
   guides/Tutorials/ihc_alignment


.. toctree::
   :maxdepth: 2
   :caption: User guide

   guides/load_and_align
   guides/annotations
   guides/graphpca
   guides/pseudo_image
   guides/landmark_alignment

.. toctree::
   :maxdepth: 2
   :caption: API reference

   autoapi/goatpy/index

.. toctree::
   :maxdepth: 1
   :caption: Development

   changelog
   contributing

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`