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goatpy 0.1.0 documentation - Home
  • goatpy documentation

Getting started

  • Installation
  • Getting Started with goatpy Tutorial

Tutorials

  • Multi-Sample goatpy Analysis Tutorial
  • Interactive Analaysis GUI
  • Aligning Spatial Glycomics and IHC images

User guide

  • Loading and aligning MALDI + H&E
  • QuPath annotations
  • GraphPCA and clustering
  • Pseudo-image generation
  • Landmark alignment GUI

API reference

  • goatpy
    • goatpy.analysis_gui
    • goatpy.annotation
    • goatpy.auto_align
    • goatpy.batch_correction
    • goatpy.bin
    • goatpy.data
    • goatpy.filter
    • goatpy.graphpca_mod
    • goatpy.he_image
    • goatpy.io
    • goatpy.landmark_alignment
    • goatpy.plotting
    • goatpy.preprocessing
    • goatpy.pseudo_image
    • goatpy.tools

Development

  • Changelog
  • Contributing
  • Repository
  • Open issue

Python Module Index

g
 
g
- goatpy
    goatpy.analysis_gui
    goatpy.annotation
    goatpy.auto_align
    goatpy.batch_correction
    goatpy.bin
    goatpy.data
    goatpy.filter
    goatpy.graphpca_mod
    goatpy.he_image
    goatpy.io
    goatpy.landmark_alignment
    goatpy.plotting
    goatpy.preprocessing
    goatpy.pseudo_image
    goatpy.tools

By Andrew Causer

© Copyright 2025, Andrew Causer.